in silico
Phase 1: In Silico Validation
- Objective
- To rapidly falsify the core assumption (Blomberg’s K ≥ 0.5 for CTmax) and to provide a preliminary, low-cost test of the central prediction (PD hotspots retain ≥15% more PD than SR hotspots) using existing data and simplified projections.
- Estimated cost
- €500-2000
- Estimated duration
- 4-6 weeks
- Success criteria
- Blomberg’s K for CTmax · K ≥ 0.5, with 95% CI excluding values < 0.4 · (Calculated using “phytools::phylosig” with 999 randomizations.)
- Preliminary PD retention difference · PD retention difference ≥ 5% (preliminary, lower bar than final 15% due to simplified projections) · (Mean (PD_retention_PD_hotspots - PD_retention_SR_hotspots) from the simplified projection.)
- Go if
- Both success criteria are met (K ≥ 0.5 and preliminary PD retention difference ≥ 5%).
- No-go if
- Blomberg’s K < 0.5, or the preliminary PD retention difference is ≤ 0%.
- Pivot if
- If K ≥ 0.5 but the preliminary PD retention difference is between 0% and 5%, refine the simplified projection (e.g., use a more detailed dispersal model) before deciding. If data for CTmax are too sparse, pivot to a targeted literature search or physiological experiment (Phase 2) to fill critical gaps.
- Risks
- Insufficient CTmax data for a large fraction of species.Probability: mediumMitigation: Use phylogenetic imputation (Rphylopars) and clearly flag imputed values. If >50% of data are missing, consider a reduced species pool or a targeted data collection effort in Phase 2.
- The simplified climate velocity projection is too crude to show a meaningful signal.Probability: mediumMitigation: Use a more sophisticated, but still rapid, approach like a “trait-based” SDM with a few key predictors (e.g., SST, depth) using the “biomod2” R package, if time permits.
- The phylogeny is not well-resolved for the target species, leading to uncertain PD calculations.Probability: lowMitigation: Use a conservative approach by collapsing poorly supported nodes and comparing PD calculations with multiple tree topologies (sensitivity analysis).